2011 TE 250 iBeat Settings

Posted this in the EFI/iBeat section but I don't think this area gets much participation...

Hello all, looking for some iBeat guidance. I just got a 2011 TE 250, full power up, 12 hole injector, and JD Tune. Not sure when the last time the bike was hooked up to iBeat but I don't think it was done after the 12 hole install. Manage to reduce low speed bog by using IONEATER & FREAK's JD settings. Still getting some bog and a flat spot in low RPM's during slow throttle roll on. I'm getting a cable next Monday and have downloaded iBeat software. From what I've read I need to reset TPS and adjust CO settings. Any guidance would be much appreciated as I have ZERO experience with this.

Any feedback is much appreciated!