I think it works as a choke in a different way. It helps the engine to get vacuum when starting as our throttle bodies are huge for the engine size. I think this bike has/had low velocity in the intake or low "vacuum" which could really affect low low rpm throttle response and runnings. So maybe they put the secondary butterfly to smoothe it out so it overcomes this drawback. Remember on old small blocks when you threw a 750 double pumper carb on it thinking it would give you "maximum power" and instead ended up with a bog when you whacked the big carb open? Hence why factory and everyone used a vaccum secondary and a 450cfm carb on the same engine.
Maybe same engineering idea here. Lets use a huge throttle body and then add a flap to smoothe the roll on so you don't end up with no vacuum at low rpm high throttle loads?
Yes? Anyone following me?
Yes, I thought about that too. It was one of the reasons I was reluctant to pull anything out of a factory set-up.
Doesn't seem to be the world-ending, engine blowing failure it might have been lol.
It just gets on & rides like a 450 should & you hold the power of control in your right hand, not the ecu

We ride a wide variety of tracks all in a day, flat-out fire trails, rocky hills, technical single track, creeks etc.
Never once do I think 'I wish the ecu would step in a help me with smoothing the power a bit'. ha ha ha.